A federated and curated metadata registry of agri-food datasets and data services

IRRI Rice SNP-Seek Database

This site provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.). SNP genotyping data (called against five reference genomes: Nipponbare reference Os-Nipponbare-Reference-IRGSP-1.0, 93-11, IR 64, Kasalath and DJ123) came from 3,000 Rice Genomes Project .

Phenotype and passport data for the 3,000 rice varieties came from the International Rice Genebank Collection Information System (IRGCIS). We are a part of an ongoing effort by the International Rice Informatics Consortium (IRIC) to centralize information access to rice research data and provide computational tools to facilitate rice improvement via discovery of new gene-trait associations and accelerated breeding.

General
Belongs to network: 
Contacts: 
Geographic
Geographic coverage: 
Global
Country where the service is managed: 
Philippines
Content
Percentage of records about agriculture: 
100%
Other topics: 
Currency: 
Current / updated
Interoperability
agINFRA The RING is part of the agINFRA project EC 7th framework program INFRA-2011-1.2.2 - Grant agr. no: 283770